ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTATGAGATCTCGGACCAGGCTTCA
TTCC
dot-bracket secondary structure
((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..))
))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTATGAGATCTCGGACCAGGCTTCA
TTCC
dot-bracket secondary structure
((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..))
))))
SIMILARITIES| miRBase sbi-MIR166a: 2e-54 PMRD sbi-miR166a: 2e-54 microPC miR166: 2e-54 | UniProt no hits RFAM mir-166: 4e-53 |
Identical with: sbi-MIR166a from miRBase (MNEST042508) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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