ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR160
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..((((((((((..(((((.((((.((....)).)))).)))))..))))))))))..))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
GCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..((((((((((..(((((.((((.((....)).)))).)))))..))))))))))..))))))).))
SIMILARITIES| miRBase gma-MIR160: 5e-39 PMRD gma-miR160a: 5e-39 microPC miR160: 5e-39 | UniProt no hits RFAM mir-160: 8e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
