ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR171
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATC miRNA* TGTTGGTGAGGTTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
CGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
)((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
)((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))
SIMILARITIES| miRBase tcc-MIR171c: 6.0E-36 PMRD ghr-miR171: 4.0E-43 microPC miR171: 4.0E-43 | UniProt no hits RFAM 1MIR171_1: 2.0E-23 |
Identical with: ghr-miR171 from PMRD (MNEST048497) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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