ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR156
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACA miRNA* TGCTCTCTATGCTTCCG mismatches: 2 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTCAATT
CATTTGTGCTCTCTATGCTTCCG
dot-bracket secondary structure
..((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))...)
)))))))))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTCAATT
CATTTGTGCTCTCTATGCTTCCG
dot-bracket secondary structure
..((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))...)
)))))))))))))))).))))..
SIMILARITIES| miRBase sly-MIR156a: 0.0000000000001 PMRD nta-miR157: 1e-65 microPC miR157: 1e-65 | UniProt no hits RFAM no hits |
Identical with: miR157 from microPC (MNEST045911) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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