ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
source: microPC, original name: miR530
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCATCTT miRNA* GGTGCAGGTGCAAGTGCA mismatches: 1 bulges: 0 |
pre-miRNA
TGCATTTGCACCTGCATCTTATTGCTTTTGTTTTGTTCTTGACTCCACAAACAAAATCAACTTCTGTCGATACAGTATGTGGTACAATTAGCTATGGAAA
CTCATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCA
dot-bracket secondary structure
.((((((((((((((((((((..((((..((((((((.(((...(((((.((...(((.((....)).)))...)).)))))..)))..)))....))))
)....)))).....)))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCATTTGCACCTGCATCTTATTGCTTTTGTTTTGTTCTTGACTCCACAAACAAAATCAACTTCTGTCGATACAGTATGTGGTACAATTAGCTATGGAAA
CTCATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCA
dot-bracket secondary structure
.((((((((((((((((((((..((((..((((((((.(((...(((((.((...(((.((....)).)))...)).)))))..)))..)))....))))
)....)))).....)))))))))))))))))))).
SIMILARITIES| miRBase ptc-MIR530b: 1e-53 PMRD ptc-miRf11519-akr: 1e-53 microPC miR530: 6e-34 | UniProt no hits RFAM MIR530: 2e-52 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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