ABOUT THIS RECORDspecies: Panicum virgatum
source: microPC, original name: miR399
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCC miRNA* CAACACTCCGTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCC
dot-bracket secondary structure
(((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCC
dot-bracket secondary structure
(((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))
SIMILARITIES| miRBase mtr-MIR399g: 0.00005 PMRD vvi-miR399g: 0.0008 microPC miR399: 3e-34 | UniProt no hits RFAM mir-399: 0.0009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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