ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGTAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
TGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGATCATGTTCGTAGTTTCA
dot-bracket secondary structure
.((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..))))))))))))).)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGATCATGTTCGTAGTTTCA
dot-bracket secondary structure
.((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..))))))))))))).)))))))).
SIMILARITIES| miRBase bra-MIR167a: 2e-51 PMRD bra-miR167a: 2e-51 microPC miR167: 5e-49 | UniProt no hits RFAM MIR167_1: 4e-50 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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