ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCCGTCA mismatches: 2 bulges: 1 |
pre-miRNA
TTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCCGTCA
dot-bracket secondary structure
.((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))
...))))))))))))))))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGACAGAAGATAGAGAGCACAGATGATGATCATGTCTGCTAAATCTGGGATTGGAGAGGGCACTGAATCAATTAAACTGCAGAGAATAAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCCGTCA
dot-bracket secondary structure
.((((.((((((((((((((((((((((((((((((((.((.((((...))))..)).))))).)).))))...........((((..........))))
...))))))))))))))))).)))).))))
SIMILARITIES| miRBase sly-MIR156a: 0.00000000000003 PMRD nta-miR157: 9e-70 microPC miR157: 4e-69 | UniProt no hits RFAM no hits |
Identical with: miR156 from microPC (MNEST045877) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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