ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGCATGCCA miRNA* GCGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
ATGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
).((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
).((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)).
SIMILARITIES| miRBase vvi-MIR160c: 1.0E-6 PMRD vvi-miR160c: 1.0E-6 microPC miR160: 7.0E-45 | UniProt no hits RFAM 0mir-160: 2.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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