ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGGGTGAAGGGAGCTCCT miRNA* GAGCTCTCTATCGCCTCAACC mismatches: 1 bulges: 1 |
pre-miRNA
GGAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATGGTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTCCT
dot-bracket secondary structure
((((((((((.(((((((((.((..((((((.(((((..........((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).)))))))).)))))..))))))..)).))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATGGTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTCCT
dot-bracket secondary structure
((((((((((.(((((((((.((..((((((.(((((..........((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).)))))))).)))))..))))))..)).))))))))))))))))))).
SIMILARITIES| miRBase ptc-MIR159e: 0.0005 PMRD ptc-miR159e: 0.0005 microPC miR159: 1e-94 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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