ABOUT THIS RECORDspecies: Ocimum basilicum
source: microPC, original name: miR160
Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCTTGTATGCC miRNA* CATGCTCGGAGCCATGCA mismatches: 4 bulges: 0 |
pre-miRNA
ATGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATGCGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCA
dot-bracket secondary structure
).((.(((((((..(((((((((((((((((.((..((......))..)).)))))))))))))))))..))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATGCGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCA
dot-bracket secondary structure
).((.(((((((..(((((((((((((((((.((..((......))..)).)))))))))))))))))..))))))).)).
SIMILARITIES| miRBase tcc-MIR160b: 9.0E-7 PMRD ppt-miR160g: 1.0E-5 microPC miR160: 4.0E-40 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
