ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR157
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCAC miRNA* GCTCTCTATACTTCTG mismatches: 0 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAAAACCAATTCAAAAGAGAG
AGAGAGAGCCTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTG
dot-bracket secondary structure
(((((((((((((((((.(((((.((((((((.((.(.......(((((((((.(((.....)))))))).)))).............(((......)))
.....).)).))))))))...))))).))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAAAACCAATTCAAAAGAGAG
AGAGAGAGCCTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTG
dot-bracket secondary structure
(((((((((((((((((.(((((.((((((((.((.(.......(((((((((.(((.....)))))))).)))).............(((......)))
.....).)).))))))))...))))).))))))))))).))))))
SIMILARITIES| miRBase bna-MIR156b: 3e-48 PMRD bna-miR156b: 3e-48 microPC miR157: 9e-21 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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