ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGTTCAAGG mismatches: 3 bulges: 0 |
pre-miRNA
GGAATGTTGTCTGGTTCAAGGTCTTGCTTTCCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTGTTCCTCAGATCTACAAGATCTCGGACC
AGGCTTCATTCC
dot-bracket secondary structure
((((((..(((((((((.((((((((......((((((((((..(..((((....))))..)............))))))))))..)))))))).)))))
))))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAATGTTGTCTGGTTCAAGGTCTTGCTTTCCGATTTGAGGATGATCCATGCTTGCATGTGTAGTTTTTTTTGTTCCTCAGATCTACAAGATCTCGGACC
AGGCTTCATTCC
dot-bracket secondary structure
((((((..(((((((((.((((((((......((((((((((..(..((((....))))..)............))))))))))..)))))))).)))))
))))..))))))
SIMILARITIES| miRBase zma-MIR166b: 1e-43 PMRD zma-miR166b: 1e-43 microPC miR166: 9e-45 | UniProt no hits RFAM mir-166: 4e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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