ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATATGGTAGCTTCA mismatches: 3 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCA
dot-bracket secondary structure
.((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCA
dot-bracket secondary structure
.((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).)))))))))).
SIMILARITIES| miRBase tcc-MIR167a: 0.00000001 PMRD vvi-miR167e: 0.00000006 microPC miR167: 5e-39 | UniProt no hits RFAM MIR167_1: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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