ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1222
source: microPC, original name: miR1222
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAGGAGTTCATTGGTATA miRNA* TGCTAGTAAACTCCTTCATGC mismatches: 2 bulges: 0 |
pre-miRNA
TGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATA
dot-bracket secondary structure
(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATA
dot-bracket secondary structure
(((((((((.((((((((((.((((..((((.......)))))))).)))))))))).)))))))))
SIMILARITIES| miRBase ppt-MIR1222a: 2e-32 PMRD ppt-miR1222a: 2e-32 microPC miR1222: 4e-30 | UniProt no hits RFAM MIR1222: 3e-31 |
Identical with: ppt-MIR1222a from miRBase (MNEST039701) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
