ABOUT THIS RECORDspecies: Fragaria vesca
source: microPC, original name: miR319
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTC miRNA* GCTCCTTGAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAGGC
TTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).)))))).
.)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAGGC
TTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).)))))).
.)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..)))))))))
SIMILARITIES| miRBase ptc-MIR159b: 0.000000000000009 PMRD ptc-miR159b: 0.000000000000009 microPC miR319: 1e-91 | UniProt no hits RFAM MIR159: 7e-16 |
Identical with: miR159 from microPC (MNEST044801) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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