ABOUT THIS RECORDspecies: Picea sitchensis
source: microPC, original name: miR482
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCTACTCCTCCCATT miRNA* TGGGAGCAGAGGATAAGACT mismatches: 1 bulges: 2 |
pre-miRNA
AGTGGGAGCAGAGGATAAGACTGCTGCTTTGAATATTATCAGTCTTTCCTACTCCTCCCATT
dot-bracket secondary structure
((((((((.((((((.(((((((.((..........)).))))))))))).)).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGTGGGAGCAGAGGATAAGACTGCTGCTTTGAATATTATCAGTCTTTCCTACTCCTCCCATT
dot-bracket secondary structure
((((((((.((((((.(((((((.((..........)).))))))))))).)).))))))))
SIMILARITIES| miRBase pab-MIR482c: 1e-29 PMRD vvi-miR482: 0.00001 microPC miR482: 1e-29 | UniProt no hits RFAM no hits |
Identical with: pab-MIR482c from miRBase (MNEST039385) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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