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ABOUT THIS RECORD

ID: MNEST046014
species: Populus tremula x Populus tremuloides
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGA

mismatches: 1
bulges: 0
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pre-miRNA
 TTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATTTGCCATGACCATATGACATTGTATTCATTTTTGCTGCGGTTCA
ATAAAGCTGTGGGA

dot-bracket secondary structure
((((((((((((.((((((((((.(.....((...(((((.((((.((..((.(.....)))..)).))))))))).....))......).)))))))))
).))))))))))))


SIMILARITIES
miRBase ptc-MIR396b: 2e-55

PMRD ptc-miRf10257-akr: 2e-55

microPC miR396: 3e-60		UniProt no hits

RFAM MIR396: 3e-54

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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