miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST046028
species: Helianthus petiolaris
source: microPC, original name: miR398

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCTT

miRNA*
 GGAGTGACACTAAGAACACATA

mismatches: 3
bulges: 1
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pre-miRNA
 AGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTTGTACTGTACAAATATCCAATGCACATACTTT
TGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCTT

dot-bracket secondary structure
(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((..(((((.(((((...))))))))))...)))))...))))
))).))))))).......))))))))))))))))))).))))))).))).


SIMILARITIES
miRBase osa-MIR398a: 0.0001

PMRD vvi-miR398a: 0.0001

microPC miR398: 5e-81		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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