ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
source: microPC, original name: miR164
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTG miRNA* TGTGCCTGTCTTCCCCA mismatches: 4 bulges: 0 |
pre-miRNA
TGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACTCTTACCTACTATAGATTTTGTTGGC
CTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCA
dot-bracket secondary structure
.((.((((..(((((((((....((((((((((.(((((.(((..(((((....)))))..)))..).)))).......((.((..........)).)).
....))))))))))....)))))))))..)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGAAGCAGGGCACGTGCATTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACTCTTACCTACTATAGATTTTGTTGGC
CTCAGTGAGTTAGTTCTTCATGTGCCTGTCTTCCCCA
dot-bracket secondary structure
.((.((((..(((((((((....((((((((((.(((((.(((..(((((....)))))..)))..).)))).......((.((..........)).)).
....))))))))))....)))))))))..)))).)).
SIMILARITIES| miRBase ptc-MIR164e: 5e-62 PMRD ppl-miR164: 6e-74 microPC miR164: 6e-74 | UniProt no hits RFAM MIR164: 1e-60 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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