ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..(((((((((.(((..((.((..((.....))..)).))..))).)))))))))..))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..(((((((((.(((..((.((..((.....))..)).))..))).)))))))))..))))))).))
SIMILARITIES| miRBase bra-MIR160a: 0.000000000000004 PMRD bra-miR160a: 0.000000000000004 microPC miR160: 2e-38 | UniProt no hits RFAM mir-160: 0.00000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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