ABOUT THIS RECORDspecies: Centaurea maculosa
source: microPC, original name: miR160
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..((((((((((..(.(((.((((.((.....)).)))).))).)..))))))))))..))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..((((((((((..(.(((.((((.((.....)).)))).))).)..))))))))))..))))))).))
SIMILARITIES| miRBase ptc-MIR160c: 4e-21 PMRD ptc-miR160c: 4e-21 microPC miR160: 1e-39 | UniProt no hits RFAM mir-160: 2e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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