ABOUT THIS RECORDspecies: Prunus persica
source: microPC, original name: miR396
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAAC miRNA* TCAATAAAGCTGTGGGA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGAGGCTGCAGTCACTCACTCACTCTCTCTCTAACTGGCTTGCGGGTCAA
TAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((.(((((.(((.((((((....)))))).....(((((..........)))))................)))..))))).))))
.))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGAGGCTGCAGTCACTCACTCACTCTCTCTCTAACTGGCTTGCGGGTCAA
TAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((.(((((.(((.((((((....)))))).....(((((..........)))))................)))..))))).))))
.))))))))))))
SIMILARITIES| miRBase mtr-MIR396b: 0.00000002 PMRD gcl-miR396a: 0.000000006 microPC miR396: 1e-59 | UniProt no hits RFAM MIR396: 0.0000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
