ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR171
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATTGAGCCGCGCCAATAT miRNA* GTTGGTGAGGTTCAATCCG mismatches: 1 bulges: 0 |
pre-miRNA
ATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATAT
dot-bracket secondary structure
(((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATAT
dot-bracket secondary structure
(((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).)))))))))
SIMILARITIES| miRBase tcc-MIR171c: 9e-35 PMRD ghr-miR171: 6e-42 microPC miR171: 6e-42 | UniProt no hits RFAM MIR171_1: 3e-22 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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