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ABOUT THIS RECORD
ID:
MNEST046075
species:
Gossypium hirsutum
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATTGAGCCGCGCCAATAT
miRNA*
GTTGGTGAGGTTCAATCCG
mismatches:
1
bulges:
0
View larger
pre-miRNA
AT
GTTGGTGAGGTTCAATCCG
AAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCA
GATTGAGCCGCGCCAATAT
dot-bracket secondary structure
((
(((((((.(((((((((.(
(.((((..(((((((.(((...))))))))))...)).)))).
))))))))).)))))))))
SIMILARITIES
miRBase
tcc-MIR171c
:
9e-35
PMRD
ghr-miR171
:
6e-42
microPC
miR171
:
6e-42
UniProt
no hits
RFAM
MIR171_1: 3e-22
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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