ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR399
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCC miRNA* GCGTCTCTCCTCTGGCAGA mismatches: 2 bulges: 0 |
pre-miRNA
GGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAGTT
GCCC
dot-bracket secondary structure
(((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))..........))))))).))))))).)
))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAGTT
GCCC
dot-bracket secondary structure
(((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))..........))))))).))))))).)
))))
SIMILARITIES| miRBase vvi-MIR399b: 0.0003 PMRD vvi-miR399b: 0.0003 microPC miR399: 2e-54 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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