ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAATCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTAATAATAGG
CTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAGTTCAAGAAATCTGTGGGA
dot-bracket secondary structure
((((((((.((((((((((((((...........................................................................((
(((((......)))))))(((....)))...)))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TTCCACAGCTTTCTTGAACTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTAATAATAGG
CTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAGTTCAAGAAATCTGTGGGA
dot-bracket secondary structure
((((((((.((((((((((((((...........................................................................((
(((((......)))))))(((....)))...)))))))))))))).))))))))
SIMILARITIES| miRBase csi-MIR396c: 4e-32 PMRD no hits microPC miR396: 4e-32 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
