ABOUT THIS RECORDspecies: Citrus sinensis
source: microPC, original name: miR172
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCA miRNA* CAGCGTCCTCAAGATTCAC mismatches: 2 bulges: 0 |
pre-miRNA
GCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCATTTTTGCTTGCCTTGGTTTTTGTCAGTGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
((((((((.(((((((((.(((.(((....((((((..(((((.(((........))).))))))))))).....)))...))).))))))))).)))))
))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCAGCGTCCTCAAGATTCACATCCAGTCTAAAGGCAAAAGCAGCAATTTTTCTTCATTTTTGCTTGCCTTGGTTTTTGTCAGTGAGAATCTTGATGATGC
TGCA
dot-bracket secondary structure
((((((((.(((((((((.(((.(((....((((((..(((((.(((........))).))))))))))).....)))...))).))))))))).)))))
))).
SIMILARITIES| miRBase csi-MIR172a: 2e-54 PMRD sly-miR172b: 0.000001 microPC miR172: 2e-54 | UniProt no hits RFAM mir-172: 0.00002 |
Identical with: csi-MIR172a from miRBase (MNEST041233) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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