ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATCTTACAGCTTCA mismatches: 3 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGAGGAACGCTAAAACATTTTGTTAAAGATTGGTTTCTTCCATCAGGTCATCTTACAGCTTCA
dot-bracket secondary structure
.(((((((..((.(((((((((((((.((((((((.....))).....)))))...)))).)))))))))))..))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGAGGAACGCTAAAACATTTTGTTAAAGATTGGTTTCTTCCATCAGGTCATCTTACAGCTTCA
dot-bracket secondary structure
.(((((((..((.(((((((((((((.((((((((.....))).....)))))...)))).)))))))))))..))))))).
SIMILARITIES| miRBase zma-MIR167e: 0.000001 PMRD zma-miR167m: 0.000001 microPC miR167: 2e-41 | UniProt no hits RFAM MIR167_1: 0.00007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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