ABOUT THIS RECORDspecies: Populus nigra
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCT miRNA* GAGCGACCTGAAATCACATG mismatches: 4 bulges: 0 |
pre-miRNA
AGGAGCGACCTGAAATCACATGTGGGCTGCACCCTCCTGGGTTATCTTGGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.(((((((((...((((((((((.....))).((..((....))..))..)))))))...))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGCGACCTGAAATCACATGTGGGCTGCACCCTCCTGGGTTATCTTGGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.(((((((((...((((((((((.....))).((..((....))..))..)))))))...))))))))).)))
SIMILARITIES| miRBase ptc-MIR398c: 2e-35 PMRD ptc-miR398c: 2e-35 microPC miR398: 8e-38 | UniProt no hits RFAM MIR398: 0.0000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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