ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTG miRNA* GGGTCGATATGAGAACACATG mismatches: 3 bulges: 0 |
pre-miRNA
CAGGGTCGATATGAGAACACATGTGCAATCAACGGCTGTAATGACGCCACATCATTATAACACATCTGTCTTTTCATGTGTTCTCAGGTCACCCCTG
dot-bracket secondary structure
(((((..(((.((((((((((((......((...(.((((((((.......)))))))).).....))......)))))))))))).)))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGGTCGATATGAGAACACATGTGCAATCAACGGCTGTAATGACGCCACATCATTATAACACATCTGTCTTTTCATGTGTTCTCAGGTCACCCCTG
dot-bracket secondary structure
(((((..(((.((((((((((((......((...(.((((((((.......)))))))).).....))......)))))))))))).)))..)))))
SIMILARITIES| miRBase ath-MIR398b: 8e-17 PMRD ath-miR398b: 8e-17 microPC miR398: 5e-49 | UniProt no hits RFAM MIR398: 6e-49 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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