ABOUT THIS RECORDspecies: Nicotiana langsdorffii x Nicotiana sanderae
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTCA mismatches: 1 bulges: 2 |
pre-miRNA
ATGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
).(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).))))))).
SIMILARITIES| miRBase tcc-MIR156c: 4.0E-9 PMRD stu-miR156a: 7.0E-8 microPC miR156: 3.0E-47 | UniProt no hits RFAM 6mir-156: 8.0E-8 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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