ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCCA miRNA* GCGTATGAGGAGCCATGC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCATGC
dot-bracket secondary structure
((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGGAGCCATGC
dot-bracket secondary structure
((.(((((((..(((((((((.(.(..((.(((((((...))))))).))..).).)))))))))..))))))).))
SIMILARITIES| miRBase bra-MIR160a: 2e-38 PMRD bra-miR160a: 2e-38 microPC miR160: 2e-38 | UniProt no hits RFAM mir-160: 0.000000000000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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