ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: microPC, original name: miR444
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGCTGCCTCAAGCTT miRNA* GCATGAGGCAACAACTGCAGT mismatches: 2 bulges: 0 |
pre-miRNA
ACCAAGCATGAGGCAACAACTGCAGTACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCAT
ACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTT
dot-bracket secondary structure
...((((.(((((((.((((((((..(((((..((((((.((((((((((...................((.....))..........(.....).)).)
))))))).))))))..)))))..)))))))).))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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ACCAAGCATGAGGCAACAACTGCAGTACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCAT
ACTTGTGGCTTTCTTGCAAGTCGTGCAGTTGCTGCCTCAAGCTT
dot-bracket secondary structure
...((((.(((((((.((((((((..(((((..((((((.((((((((((...................((.....))..........(.....).)).)
))))))).))))))..)))))..)))))))).))))))).))))
SIMILARITIES| miRBase hvu-MIR444a: 5e-56 PMRD tae-miR444: 8e-52 microPC miR444: 4e-78 | UniProt no hits RFAM MIR444: 8e-77 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
