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ABOUT THIS RECORD
ID:
MNEST046192
species:
Populus tremula x Populus tremuloides
source:
microPC, original name:
miR1447
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGAATTGCAGTGCCTTGAT
miRNA*
CATGGCACTGCAATTCTAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
AT
CATGGCACTGCAATTCTAAA
TATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAAT
CAGAATTGCAGTGCCTTGAT
dot-bracket secondary structure
((
((.((((((((((((((...
......(((((((......))))))).........(((((((.......)))))))
.)))))))))))))).))))
SIMILARITIES
miRBase
ptc-MIR1447
:
1e-31
PMRD
ptc-miRf11238-akr
:
1e-31
microPC
miR1447
:
2e-27
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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