ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
source: microPC, original name: miR1447
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAATTGCAGTGCCTTGAT miRNA* CATGGCACTGCAATTCTAAA mismatches: 2 bulges: 0 |
pre-miRNA
ATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAATCAGAATTGCAGTGCCTTGAT
dot-bracket secondary structure
((((.((((((((((((((.........(((((((......))))))).........(((((((.......))))))).)))))))))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAATCAGAATTGCAGTGCCTTGAT
dot-bracket secondary structure
((((.((((((((((((((.........(((((((......))))))).........(((((((.......))))))).)))))))))))))).))))
SIMILARITIES| miRBase ptc-MIR1447: 1e-31 PMRD ptc-miRf11238-akr: 1e-31 microPC miR1447: 2e-27 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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