ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR1448
source: microPC, original name: miR1448
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCCAACGCCTCCCATAC miRNA* ATGGGAGGATTGGACAGTA mismatches: 2 bulges: 1 |
pre-miRNA
GTATGGGAGGATTGGACAGTACTGCTTGGTTTTAGTTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATAC
dot-bracket secondary structure
((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTATGGGAGGATTGGACAGTACTGCTTGGTTTTAGTTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATAC
dot-bracket secondary structure
((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))
SIMILARITIES| miRBase ptc-MIR1448: 2e-32 PMRD ptc-miR1448: 2e-32 microPC miR1448: 4e-30 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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