ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR166
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))
SIMILARITIES| miRBase pta-MIR166a: 8e-38 PMRD pta-miR166a: 8e-38 microPC miR166: 8e-38 | UniProt no hits RFAM mir-166: 0.00006 |
Identical with: pta-MIR166a from miRBase (MNEST039420) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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