ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR156
source: microPC, original name: miR157
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTCTTCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TTGACAGAAGAAAGAGAGCACAACCCGCCATTGGCCAAAGAGATCTTCGCCACTGTTGGGAGTGTGCTCTCTCTTCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((.((((.((.((((..(((....))).)))).)).))))..)))))))))).)))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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TTGACAGAAGAAAGAGAGCACAACCCGCCATTGGCCAAAGAGATCTTCGCCACTGTTGGGAGTGTGCTCTCTCTTCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((.((((.((.((((..(((....))).)))).)).))))..)))))))))).)))))))))))
SIMILARITIES| miRBase rco-MIR156e: 7e-17 PMRD gma-miR156b: 0.00000000002 microPC miR156: 6e-42 | UniProt no hits RFAM mir-156: 0.000000000000001 |
Identical with: miR156 from microPC (MNEST045433) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
