ABOUT THIS RECORDspecies: Populus tremula
source: microPC, original name: miR169
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCC miRNA* CAAGTGTCCTTGGCTAA mismatches: 1 bulges: 1 |
pre-miRNA
TAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCG
CGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCTAA
dot-bracket secondary structure
(((((((((((.((((((.(((((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((.
..(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCAAGAACACGAGCATTTATGCAGTGCTCAAAAGAAAAGGAGAGAATGATCCCAGCTTGCTGCG
CGCTACAAGGTCAATCCATGGAAGCAGCGAGAAGAAGGTGGTTTATAGCTAGAATCCTCATGAGGTTCACAGCAAGTGTCCTTGGCTAA
dot-bracket secondary structure
(((((((((((.((((((.(((((((((....((((((.((.....(((((((.....)))))))..............((((.(((....((((((((.
..(((...((.....)).)))..)))))))).....))).))))....)).))))))....)))))).)))))))))))))))))))).
SIMILARITIES| miRBase ptc-MIR169k: 5e-66 PMRD ptc-miR169k: 5e-66 microPC miR169: 8e-105 | UniProt no hits RFAM MIR169_2: 9e-65 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
