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ABOUT THIS RECORD
ID:
MNEST046208
species:
Populus tremula
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCG
miRNA*
GCAGGTTGTTCTTGGCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
CAGCCAAGGATGACTTGCCG
ACGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTTG
GCAGGTTGTTCTTGGCT
dot-bracket secondary structure
.(((((((((..((((((((
(((..((((((((.(((.(((((..........))))).....)))))))).)))...)))))
))))))..)))))))))
SIMILARITIES
miRBase
ptc-MIR169b
:
4e-31
PMRD
ptr-miR169a
:
5e-52
microPC
miR169
:
5e-52
UniProt
no hits
RFAM
MIR169_2: 7e-30
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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