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ABOUT THIS RECORD
ID:
MNEST046246
species:
Populus nigra
miRNA family:
MIR159
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTGAAGTCCAATAG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TG
GAGCTCCTTGAAGTCCAATAG
AAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCAGTCATTTTGATGGGCCT
GCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTAGATCTTTT
TTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((..(((((((.((
(((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))
).))....)))).))))).)))))..)))))))..))..)).)))))
.)))))))..)))))))))))
SIMILARITIES
miRBase
ptc-MIR159b
:
8e-80
PMRD
ptc-miR159b
:
8e-80
microPC
miR159
:
8e-80
UniProt
no hits
RFAM
MIR159: 1e-76
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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