ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR156
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACA miRNA* TGGTCTCCATGATTCTG mismatches: 3 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTG
dot-bracket secondary structure
(((((.((.((((.(((((.((((((.((((.((....)))))).))).))).))))).)))).))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGATAGAGAGCACATCCGCTCACATGCCGGGACTCTGCGTTTGAGGTGTATGTGGTCTCCATGATTCTG
dot-bracket secondary structure
(((((.((.((((.(((((.((((((.((((.((....)))))).))).))).))))).)))).))..)))))
SIMILARITIES| miRBase pta-MIR156a: 5e-36 PMRD pta-miR156a: 5e-36 microPC miR157: 5e-36 | UniProt no hits RFAM no hits |
Identical with: pta-miR156a from PMRD (MNEST051551) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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