ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAGGGATGACTTGCCGA miRNA* GGCAAGTTGTCCCTGGCT mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCT
dot-bracket secondary structure
.(((((((((..((((((((((((..((((((....(((((....)))))...))))))...))).)))))))))..)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCT
dot-bracket secondary structure
.(((((((((..((((((((((((..((((((....(((((....)))))...))))))...))).)))))))))..)))))))))
SIMILARITIES| miRBase zma-MIR169r: 0.001 PMRD no hits microPC miR169: 1e-43 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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