ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR437
source: microPC, original name: miR437
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTTAGAGAAGTTTGACTT miRNA* GTCAAACCTCTCTAACTTTGA mismatches: 1 bulges: 0 |
pre-miRNA
AAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAATTCTCCATGAAATATATTTTGA
TAATGCATTTATTGAACTTGTAGATGATAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
(((((((((.(((((((((((((((((((((.((((((((.................(((((((.((.(((...............)))...)).)))))
))...(((((((.......))))))).........)))))))).))))))))))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGTCAAACCTCTCTAACTTTGATCAAGTTTATAGAAAAATGCACCAAAATCTAGAATATCAAACTAGTTCCATTAAATTCTCCATGAAATATATTTTGA
TAATGCATTTATTGAACTTGTAGATGATAATATATTTTTTCTAAAAACTTGATCAAAGTTAGAGAAGTTTGACTT
dot-bracket secondary structure
(((((((((.(((((((((((((((((((((.((((((((.................(((((((.((.(((...............)))...)).)))))
))...(((((((.......))))))).........)))))))).))))))))))))))))))))).)))))))))
SIMILARITIES| miRBase ssp-MIR437a: 2e-96 PMRD sof-miR437: 4e-45 microPC miR437: 2e-25 | UniProt no hits RFAM no hits |
Identical with: ssp-MIR437a from miRBase (MNEST042475) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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