ABOUT THIS RECORDspecies: Helianthus exilis
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGTGCCAATATCAC miRNA* GATGTTGGTTCGGTTCAAT mismatches: 3 bulges: 0 |
pre-miRNA
CGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
)..(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
)..(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))))..
SIMILARITIES| miRBase rco-MIR171a: 3.0E-10 PMRD vvi-miR171c: 2.0E-8 microPC miR171: 2.0E-42 | UniProt no hits RFAM 1MIR171_1: 5.0E-9 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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