ABOUT THIS RECORDspecies: Citrus sinensis
source: microPC, original name: miR166
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGAG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGAGGACACTGCTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATGGTGGATAACAATATACGGAT
TCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.(((..(((((((((((((.......(......)...(((((.....)))))..))))))))..)))))..)))..
...(((.....)))))).)))..))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GGGAATGTTGTCTGGCTCGAGGACACTGCTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATGGTGGATAACAATATACGGAT
TCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.(((..(((((((((((((.......(......)...(((((.....)))))..))))))))..)))))..)))..
...(((.....)))))).)))..))))))..)))))))
SIMILARITIES| miRBase csi-MIR166e: 4e-72 PMRD cpt-miR166: 4e-72 microPC miR166: 2e-74 | UniProt no hits RFAM mir-166: 0.0000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
