ABOUT THIS RECORDspecies: Zamia vazquezii
source: microPC, original name: miR535
Taxonomy by NCBI:
Zamia vazquezii Zamia Zamiaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGACGAGAGAGAGCACGCT miRNA* CGTGTTCTCGTCCCGTTGTCA mismatches: 3 bulges: 1 |
pre-miRNA
ATGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCCCGTTGTCA
dot-bracket secondary structure
).(((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCCCGTTGTCA
dot-bracket secondary structure
).(((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).))))))).
SIMILARITIES| miRBase rco-MIR535: 7.0E-5 PMRD rco-miR535: 7.0E-5 microPC miR535: 3.0E-50 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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