ABOUT THIS RECORDspecies: Citrus sinensis
source: microPC, original name: miR482
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCCACCCCTCCCATT miRNA* TGGGAGGCTTGGCAAGAAG mismatches: 3 bulges: 1 |
pre-miRNA
AATGGGAGGCTTGGCAAGAAGCGATCTATTTTTCTTGTTCAATAAAAAAGAAAAAGAAAATTTTTCTTGCCCACCCCTCCCATT
dot-bracket secondary structure
(((((((((...(((((((((.......((((((((...........)))))))).......)))))))))....)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AATGGGAGGCTTGGCAAGAAGCGATCTATTTTTCTTGTTCAATAAAAAAGAAAAAGAAAATTTTTCTTGCCCACCCCTCCCATT
dot-bracket secondary structure
(((((((((...(((((((((.......((((((((...........)))))))).......)))))))))....)))))))))
SIMILARITIES| miRBase csi-MIR482b: 5e-18 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
