ABOUT THIS RECORDspecies: Panicum virgatum
source: microPC, original name: miR160
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTGCGAGGAGCCAAGC mismatches: 2 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCTGGCTCTACTGCG
GATGGCGTGCGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.(((((((((..(((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))))).)))).)))
..))))))))).))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCTGGCTCTACTGCG
GATGGCGTGCGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.(((((((((..(((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))))).)))).)))
..))))))))).))))))).))
SIMILARITIES| miRBase tae-MIR160: 0.0000000000004 PMRD tae-miR160: 0.0000000000004 microPC miR160: 5e-65 | UniProt no hits RFAM mir-160: 0.000000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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