ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR472
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCTACTCCTCCCATACC miRNA* AGTGGGATGGGTGGAAAGA mismatches: 4 bulges: 1 |
pre-miRNA
CGGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
)....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
)....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES| miRBase ghr-MIR482a: 4.0E-43 PMRD ghr-miR482a: 4.0E-43 microPC miR482: 6.0E-39 | UniProt no hits RFAM no hits |
Identical with: miR482 from microPC (MNEST045290), ghr-miR482a from PMRD , ghr-MIR482a from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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